Detailed information of SNP:
|
SNP ID:
sf0106826714(Gbrowse)
Chromosome: chr01 Position: 6826714 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 50.11% | 49.89% |
| All Indica | 797 | 24.72% | 75.28% |
| All Japonica | 497 | 83.30% | 16.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 12.57% | 87.43% |
| Indica II | 212 | 28.77% | 71.23% |
| Indica Intermediate | 211 | 42.18% | 57.82% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106826714 | C->T | INTERGENIC | None |