Detailed information of SNP:
|
SNP ID:
sf0106872407(Gbrowse)
Chromosome: chr01 Position: 6872407 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 51.48% | 48.52% |
| All Indica | 799 | 18.02% | 81.98% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 8.53% | 91.47% |
| Indica II | 213 | 32.39% | 67.61% |
| Indica Intermediate | 211 | 20.38% | 79.62% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106872407 | T->C | INTERGENIC | None |