Detailed information of SNP:
|
SNP ID:
sf0106873407(Gbrowse)
Chromosome: chr01 Position: 6873407 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 55.12% | 44.88% |
| All Indica | 797 | 89.96% | 10.04% |
| All Japonica | 497 | 8.05% | 91.95% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 69.81% | 30.19% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106873407 | T->A | INTERGENIC | None |