Detailed information of SNP:
|
SNP ID:
sf0106882091(Gbrowse)
Chromosome: chr01 Position: 6882091 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 58.39% | 41.61% |
| All Indica | 782 | 29.54% | 70.46% |
| All Japonica | 496 | 97.78% | 2.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 17.12% | 82.88% |
| Indica II | 211 | 43.60% | 56.40% |
| Indica Intermediate | 203 | 37.44% | 62.56% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106882091 | C->T | INTERGENIC | None |