Detailed information of SNP:
|
SNP ID:
sf0106890421(Gbrowse)
Chromosome: chr01 Position: 6890421 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 68.19% | 31.81% |
| All Indica | 799 | 91.49% | 8.51% |
| All Japonica | 497 | 24.75% | 75.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106890421 | T->C | LOC_Os01g12530(LOC_Os01g12530.2) | INTRON |
| sf0106890421 | T->C | LOC_Os01g12530(LOC_Os01g12530.1) | INTRON |
| sf0106890421 | T->C | LOC_Os01g12530(LOC_Os01g12530.3) | INTRON |
| sf0106890421 | T->C | LOC_Os01g12530(LOC_Os01g12530.5) | UTR_5_PRIME |
| sf0106890421 | T->C | LOC_Os01g12530(LOC_Os01g12530.4) | INTRON |