Detailed information of SNP:
|
SNP ID:
sf0106922867(Gbrowse)
Chromosome: chr01 Position: 6922867 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1316 | 74.70% | 25.30% |
| All Indica | 796 | 89.82% | 10.18% |
| All Japonica | 398 | 60.05% | 39.95% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 209 | 93.30% | 6.70% |
| Temperate Japonica | 250 | 64.80% | 35.20% |
| Tropical Japonica | 90 | 36.67% | 63.33% |
| Japonica Intermediate | 58 | 75.86% | 24.14% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106922867 | T->C | INTERGENIC | None |