Detailed information of SNP:
|
SNP ID:
sf0106925624(Gbrowse)
Chromosome: chr01 Position: 6925624 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1347 | 61.69% | 38.31% |
| All Indica | 742 | 39.35% | 60.65% |
| All Japonica | 485 | 90.52% | 9.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 339 | 35.10% | 64.90% |
| Indica II | 199 | 42.71% | 57.29% |
| Indica Intermediate | 204 | 43.14% | 56.86% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 83 | 55.42% | 44.58% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106925624 | C->A | INTERGENIC | None |