Detailed information of SNP:
|
SNP ID:
sf0106948505(Gbrowse)
Chromosome: chr01 Position: 6948505 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 64.57% | 35.43% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 496 | 15.32% | 84.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106948505 | A->G | INTERGENIC | None |