Detailed information of SNP:
|
SNP ID:
sf0106989017(Gbrowse)
Chromosome: chr01 Position: 6989017 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 95.28% | 4.72% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 87.32% | 12.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106989017 | C->T | LOC_Os01g12680(LOC_Os01g12680.4) | INTRON |
| sf0106989017 | C->T | LOC_Os01g12680(LOC_Os01g12680.2) | INTRON |