Detailed information of SNP:
|
SNP ID:
sf0107004955(Gbrowse)
Chromosome: chr01 Position: 7004955 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 90.56% | 9.44% |
| All Indica | 799 | 92.12% | 7.88% |
| All Japonica | 497 | 86.12% | 13.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107004955 | T->C | INTERGENIC | None |