Detailed information of SNP:
|
SNP ID:
sf0107006872(Gbrowse)
Chromosome: chr01 Position: 7006872 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 82.71% | 17.29% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 470 | 50.43% | 49.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 313 | 40.58% | 59.42% |
| Tropical Japonica | 92 | 88.04% | 11.96% |
| Japonica Intermediate | 65 | 44.62% | 55.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107006872 | T->C | INTERGENIC | None |