Detailed information of SNP:
|
SNP ID:
sf0107014284(Gbrowse)
Chromosome: chr01 Position: 7014284 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 76.45% | 23.55% |
| All Indica | 798 | 61.28% | 38.72% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 213 | 46.01% | 53.99% |
| Indica Intermediate | 210 | 33.33% | 66.67% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107014284 | T->C | LOC_Os01g12700(LOC_Os01g12700.1) | INTRON |