Detailed information of SNP:
|
SNP ID:
sf0107014621(Gbrowse)
Chromosome: chr01 Position: 7014621 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 65.68% | 34.32% |
| All Indica | 799 | 48.44% | 51.56% |
| All Japonica | 497 | 86.72% | 13.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 16.00% | 84.00% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107014621 | G->A | LOC_Os01g12700(LOC_Os01g12700.1) | INTRON |