Detailed information of SNP:
|
SNP ID:
sf0107014964(Gbrowse)
Chromosome: chr01 Position: 7014964 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1359 | 63.06% | 36.94% |
| All Indica | 796 | 93.34% | 6.66% |
| All Japonica | 442 | 3.62% | 96.38% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 372 | 92.47% | 7.53% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 44 | 22.73% | 77.27% |
| Japonica Intermediate | 64 | 4.69% | 95.31% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107014964 | A->T | LOC_Os01g12700(LOC_Os01g12700.1) | INTRON |