Detailed information of SNP:



SNP ID: sf0107025972(Gbrowse)

Chromosome: chr01

Position: 7025972
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1416 80.44% 19.56%
All Indica799 99.87% 0.13%
All Japonica494 45.75% 54.25%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica333 37.54% 62.46%
Tropical Japonica94 78.72% 21.28%
Japonica Intermediate67 40.30% 59.70%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 80.95% 19.05%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0107025972 A->G LOC_Os01g12710(LOC_Os01g12710.2) INTRON
sf0107025972 A->G LOC_Os01g12710(LOC_Os01g12710.1) INTRON