Detailed information of SNP:
|
SNP ID:
sf0107046840(Gbrowse)
Chromosome: chr01 Position: 7046840 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.58% | 45.42% |
| All Indica | 798 | 39.47% | 60.53% |
| All Japonica | 497 | 85.92% | 14.08% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 15.20% | 84.80% |
| Indica II | 213 | 54.93% | 45.07% |
| Indica Intermediate | 210 | 67.14% | 32.86% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107046840 | T->C | INTERGENIC | None |