Detailed information of SNP:
|
SNP ID:
sf0107056661(Gbrowse)
Chromosome: chr01 Position: 7056661 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1336 | 97.08% | 2.92% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 418 | 91.63% | 8.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 268 | 90.30% | 9.70% |
| Tropical Japonica | 89 | 97.75% | 2.25% |
| Japonica Intermediate | 61 | 88.52% | 11.48% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107056661 | A->G | INTERGENIC | None |