Detailed information of SNP:
|
SNP ID:
sf0107058016(Gbrowse)
Chromosome: chr01 Position: 7058016 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 68.87% | 31.13% |
| All Indica | 798 | 64.79% | 35.21% |
| All Japonica | 470 | 72.34% | 27.66% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 46.95% | 53.05% |
| Indica Intermediate | 210 | 45.24% | 54.76% |
| Temperate Japonica | 310 | 67.10% | 32.90% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107058016 | C->T | INTERGENIC | None |