Detailed information of SNP:
|
SNP ID:
sf0107061581(Gbrowse)
Chromosome: chr01 Position: 7061581 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 50.28% | 49.72% |
| All Indica | 796 | 68.22% | 31.78% |
| All Japonica | 497 | 15.49% | 84.51% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 213 | 46.48% | 53.52% |
| Indica Intermediate | 209 | 47.37% | 52.63% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107061581 | T->C | LOC_Os01g12760(LOC_Os01g12760.1) | INTRON |