Detailed information of SNP:
|
SNP ID:
sf0107069642(Gbrowse)
Chromosome: chr01 Position: 7069642 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 93.71% | 6.29% |
| All Indica | 797 | 97.11% | 2.89% |
| All Japonica | 494 | 87.04% | 12.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 95.71% | 4.29% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 39.56% | 60.44% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107069642 | G->A | INTERGENIC | None |