Detailed information of SNP:
|
SNP ID:
sf0107071026(Gbrowse)
Chromosome: chr01 Position: 7071026 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 84.03% | 15.97% |
| All Indica | 795 | 73.46% | 26.54% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 56.34% | 43.66% |
| Indica Intermediate | 207 | 58.45% | 41.55% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107071026 | C->T | LOC_Os01g12770(LOC_Os01g12770.1) | Non-Synonymous SNP |