Detailed information of SNP:
|
SNP ID:
sf0107073175(Gbrowse)
Chromosome: chr01 Position: 7073175 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 76.09% | 23.91% |
| All Indica | 798 | 69.17% | 30.83% |
| All Japonica | 497 | 83.70% | 16.30% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 84.53% | 15.47% |
| Indica II | 213 | 55.87% | 44.13% |
| Indica Intermediate | 210 | 55.24% | 44.76% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107073175 | C->T | INTERGENIC | None |