Detailed information of SNP:
|
SNP ID:
sf0107079292(Gbrowse)
Chromosome: chr01 Position: 7079292 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 63.83% | 36.17% |
| All Indica | 779 | 89.86% | 10.14% |
| All Japonica | 497 | 17.71% | 82.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 198 | 71.72% | 28.28% |
| Indica Intermediate | 206 | 90.29% | 9.71% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107079292 | T->C | LOC_Os01g12790(LOC_Os01g12790.1) | INTRON |