Detailed information of SNP:
|
SNP ID:
sf0107080316(Gbrowse)
Chromosome: chr01 Position: 7080316 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 54.27% | 45.73% |
| All Indica | 797 | 72.40% | 27.60% |
| All Japonica | 497 | 18.11% | 81.89% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 211 | 54.03% | 45.97% |
| Indica Intermediate | 211 | 58.29% | 41.71% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107080316 | A->G | LOC_Os01g12790(LOC_Os01g12790.1) | INTRON |