Detailed information of SNP:
SNP ID:
sf0107085714(Gbrowse)
Chromosome: chr01 Position: 7085714 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 62.27% | 37.73% |
All Indica | 799 | 96.25% | 3.75% |
All Japonica | 496 | 17.34% | 82.66% |
Aus | 67 | 4.48% | 95.52% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 99.06% | 0.94% |
Indica Intermediate | 211 | 86.73% | 13.27% |
Temperate Japonica | 334 | 1.50% | 98.50% |
Tropical Japonica | 94 | 73.40% | 26.60% |
Japonica Intermediate | 68 | 17.65% | 82.35% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0107085714 | A->G | LOC_Os01g12800(LOC_Os01g12800.1) | INTRON |