Detailed information of SNP:
|
SNP ID:
sf0107088778(Gbrowse)
Chromosome: chr01 Position: 7088778 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 64.13% | 35.87% |
| All Indica | 799 | 47.18% | 52.82% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 15.47% | 84.53% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107088778 | A->G | INTERGENIC | None |