Detailed information of SNP:
|
SNP ID:
sf0107089989(Gbrowse)
Chromosome: chr01 Position: 7089989 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 64.41% | 35.59% |
| All Indica | 799 | 47.81% | 52.19% |
| All Japonica | 497 | 84.51% | 15.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 16.27% | 83.73% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107089989 | G->T | INTERGENIC | None |