Detailed information of SNP:
|
SNP ID:
sf0107090002(Gbrowse)
Chromosome: chr01 Position: 7090002 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 68.88% | 31.12% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 496 | 17.94% | 82.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107090002 | A->T | INTERGENIC | None |