Detailed information of SNP:
|
SNP ID:
sf0107110912(Gbrowse)
Chromosome: chr01 Position: 7110912 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 69.11% | 30.89% |
| All Indica | 789 | 51.58% | 48.42% |
| All Japonica | 496 | 91.13% | 8.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 18.36% | 81.64% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 58.06% | 41.94% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107110912 | C->T | INTERGENIC | None |