Detailed information of SNP:
|
SNP ID:
sf0107114494(Gbrowse)
Chromosome: chr01 Position: 7114494 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 64.48% | 35.52% |
| All Indica | 799 | 44.06% | 55.94% |
| All Japonica | 497 | 90.14% | 9.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 9.33% | 90.67% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107114494 | A->G | INTERGENIC | None |