Detailed information of SNP:
|
SNP ID:
sf0107156245(Gbrowse)
Chromosome: chr01 Position: 7156245 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 51.55% | 48.45% |
| All Indica | 798 | 22.68% | 77.32% |
| All Japonica | 497 | 89.13% | 10.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 8.27% | 91.73% |
| Indica II | 213 | 16.90% | 83.10% |
| Indica Intermediate | 210 | 54.29% | 45.71% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107156245 | C->T | INTERGENIC | None |