Detailed information of SNP:
|
SNP ID:
sf0107162140(Gbrowse)
Chromosome: chr01 Position: 7162140 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 51.38% | 48.62% |
| All Indica | 797 | 22.46% | 77.54% |
| All Japonica | 497 | 89.13% | 10.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 8.02% | 91.98% |
| Indica II | 213 | 16.43% | 83.57% |
| Indica Intermediate | 210 | 54.29% | 45.71% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107162140 | G->A | LOC_Os01g12890(LOC_Os01g12890.1) | Non-Synonymous SNP |