Detailed information of SNP:
|
SNP ID:
sf0107177303(Gbrowse)
Chromosome: chr01 Position: 7177303 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1364 | 94.87% | 5.13% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 442 | 85.52% | 14.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 297 | 80.13% | 19.87% |
| Tropical Japonica | 87 | 97.70% | 2.30% |
| Japonica Intermediate | 58 | 94.83% | 5.17% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107177303 | A->T | LOC_Os01g12930(LOC_Os01g12930.1) | INTRON |