Detailed information of SNP:
|
SNP ID:
sf0107187503(Gbrowse)
Chromosome: chr01 Position: 7187503 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 75.90% | 24.10% |
| All Indica | 799 | 74.72% | 25.28% |
| All Japonica | 497 | 90.14% | 9.86% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 82.40% | 17.60% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 211 | 49.76% | 50.24% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107187503 | T->C | INTERGENIC | None |