Detailed information of SNP:
|
SNP ID:
sf0107197487(Gbrowse)
Chromosome: chr01 Position: 7197487 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 96.97% | 3.03% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 91.75% | 8.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107197487 | T->C | LOC_Os01g12950(LOC_Os01g12950.4) | INTRON |
| sf0107197487 | T->C | LOC_Os01g12950(LOC_Os01g12950.1) | INTRON |
| sf0107197487 | T->C | LOC_Os01g12950(LOC_Os01g12950.3) | INTRON |
| sf0107197487 | T->C | LOC_Os01g12950(LOC_Os01g12950.2) | INTRON |