Detailed information of SNP:
|
SNP ID:
sf0107208160(Gbrowse)
Chromosome: chr01 Position: 7208160 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 68.24% | 31.76% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 496 | 12.30% | 87.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 53.76% | 46.24% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107208160 | A->G | LOC_Os01g12950(LOC_Os01g12950.3) | INTRON |
| sf0107208160 | A->G | LOC_Os01g12950(LOC_Os01g12950.2) | INTRON |