Detailed information of SNP:
|
SNP ID:
sf0107212426(Gbrowse)
Chromosome: chr01 Position: 7212426 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1319 | 91.36% | 8.64% |
| All Indica | 701 | 84.31% | 15.69% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 321 | 70.40% | 29.60% |
| Indica II | 182 | 100.00% | 0.00% |
| Indica Intermediate | 198 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107212426 | C->A | LOC_Os01g12950(LOC_Os01g12950.3) | INTRON |
| sf0107212426 | C->A | LOC_Os01g12950(LOC_Os01g12950.2) | INTRON |