Detailed information of SNP:
|
SNP ID:
sf0107248555(Gbrowse)
Chromosome: chr01 Position: 7248555 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 92.63% | 7.37% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 477 | 79.87% | 20.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 320 | 72.19% | 27.81% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 65 | 92.31% | 7.69% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107248555 | C->A | INTERGENIC | None |