Detailed information of SNP:
|
SNP ID:
sf0107258201(Gbrowse)
Chromosome: chr01 Position: 7258201 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 53.89% | 46.11% |
| All Indica | 797 | 78.54% | 21.46% |
| All Japonica | 495 | 6.87% | 93.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 84.49% | 15.51% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 50.48% | 49.52% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 93 | 30.11% | 69.89% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107258201 | C->T | INTERGENIC | None |