Detailed information of SNP:
|
SNP ID:
sf0107280602(Gbrowse)
Chromosome: chr01 Position: 7280602 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 51.45% | 48.55% |
| All Indica | 795 | 25.03% | 74.97% |
| All Japonica | 496 | 85.28% | 14.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 15.32% | 84.68% |
| Indica II | 213 | 15.49% | 84.51% |
| Indica Intermediate | 210 | 51.90% | 48.10% |
| Temperate Japonica | 335 | 86.57% | 13.43% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 62.16% | 37.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107280602 | T->C | INTERGENIC | None |