Detailed information of SNP:
|
SNP ID:
sf0107332687(Gbrowse)
Chromosome: chr01 Position: 7332687 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 53.33% | 46.67% |
| All Indica | 790 | 22.66% | 77.34% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 16.49% | 83.51% |
| Indica II | 209 | 13.40% | 86.60% |
| Indica Intermediate | 211 | 42.65% | 57.35% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107332687 | T->C | INTERGENIC | None |