Detailed information of SNP:
|
SNP ID:
sf0107339125(Gbrowse)
Chromosome: chr01 Position: 7339125 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 53.91% | 46.09% |
| All Indica | 798 | 22.56% | 77.44% |
| All Japonica | 487 | 96.51% | 3.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 16.53% | 83.47% |
| Indica II | 213 | 12.21% | 87.79% |
| Indica Intermediate | 210 | 43.81% | 56.19% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 85 | 85.88% | 14.12% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107339125 | G->A | INTERGENIC | None |