Detailed information of SNP:
|
SNP ID:
sf0107366191(Gbrowse)
Chromosome: chr01 Position: 7366191 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 54.62% | 45.38% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107366191 | T->A | INTERGENIC | None |