Detailed information of SNP:
|
SNP ID:
sf0107384646(Gbrowse)
Chromosome: chr01 Position: 7384646 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 88.70% | 11.30% |
| All Indica | 797 | 93.35% | 6.65% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 74.19% | 25.81% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107384646 | T->C | INTERGENIC | None |