Detailed information of SNP:
|
SNP ID:
sf0107394608(Gbrowse)
Chromosome: chr01 Position: 7394608 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 93.01% | 6.99% |
| All Indica | 798 | 96.87% | 3.13% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107394608 | G->A | INTERGENIC | None |