Detailed information of SNP:
|
SNP ID:
sf0107458962(Gbrowse)
Chromosome: chr01 Position: 7458962 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1341 | 93.81% | 6.19% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 420 | 81.67% | 18.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 269 | 73.61% | 26.39% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 60 | 93.33% | 6.67% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107458962 | C->T | INTERGENIC | None |