Detailed information of SNP:
|
SNP ID:
sf0107526372(Gbrowse)
Chromosome: chr01 Position: 7526372 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 54.01% | 45.99% |
| All Indica | 779 | 93.58% | 6.42% |
| All Japonica | 496 | 2.22% | 97.78% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 368 | 95.11% | 4.89% |
| Indica II | 208 | 88.94% | 11.06% |
| Indica Intermediate | 203 | 95.57% | 4.43% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 32.50% | 67.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107526372 | G->A | INTERGENIC | None |