Detailed information of SNP:
|
SNP ID:
sf0107532941(Gbrowse)
Chromosome: chr01 Position: 7532941 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 59.07% | 40.93% |
| All Indica | 798 | 95.11% | 4.89% |
| All Japonica | 497 | 11.87% | 88.13% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107532941 | G->A | INTERGENIC | None |