Detailed information of SNP:



SNP ID: sf0107539423(Gbrowse)

Chromosome: chr01

Position: 7539423
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 96.76% 3.24%
All Indica799 99.87% 0.13%
All Japonica497 91.55% 8.45%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 64.89% 35.11%
Japonica Intermediate68 89.71% 10.29%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0107539423 C->T INTERGENIC None