Detailed information of SNP:
SNP ID:
sf0107539423(Gbrowse)
Chromosome: chr01 Position: 7539423 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 96.76% | 3.24% |
All Indica | 799 | 99.87% | 0.13% |
All Japonica | 497 | 91.55% | 8.45% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 335 | 99.40% | 0.60% |
Tropical Japonica | 94 | 64.89% | 35.11% |
Japonica Intermediate | 68 | 89.71% | 10.29% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0107539423 | C->T | INTERGENIC | None |