Detailed information of SNP:
|
SNP ID:
sf0107543024(Gbrowse)
Chromosome: chr01 Position: 7543024 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 98.44% | 1.56% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 493 | 97.57% | 2.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0107543024 | G->A | LOC_Os01g13510(LOC_Os01g13510.1) | Non-Synonymous SNP |